Index
pcvct.AbstractMonadpcvct.AbstractPhysiCellSequencepcvct.AbstractPopulationTimeSeriespcvct.AbstractSamplingpcvct.AbstractTrialpcvct.AbstractVariationpcvct.AddGridVariationsResultpcvct.AddLHSVariationsResultpcvct.AddRBDVariationsResultpcvct.AddSobolVariationsResultpcvct.AddVariationMethodpcvct.AddVariationsResultpcvct.AgentDictpcvct.AgentIDpcvct.AverageSubstrateTimeSeriespcvct.CoVariationpcvct.DiscreteVariationpcvct.DistributedVariationpcvct.ElementaryVariationpcvct.ExtracellularSubstrateTimeSeriespcvct.GSAMethodpcvct.GSASamplingpcvct.GridVariationpcvct.ImportDestFolderpcvct.ImportDestFolderspcvct.ImportSourcepcvct.ImportSourcespcvct.InputFolderpcvct.InputFolderspcvct.LHSVariationpcvct.LocationParsedVariationspcvct.MOATpcvct.MOATSamplingpcvct.Monadpcvct.MonadPopulationTimeSeriespcvct.PCVCTGlobalspcvct.PCVCTOutputpcvct.PCVCTPCFResultpcvct.ParsedVariationspcvct.PhysiCellComponentpcvct.PhysiCellSequencepcvct.PhysiCellSnapshotpcvct.PhysiCellSnapshotpcvct.ProjectLocationspcvct.PruneOptionspcvct.RBDpcvct.RBDSamplingpcvct.RBDVariationpcvct.Samplingpcvct.Simulationpcvct.SimulationPopulationTimeSeriespcvct.SimulationProcesspcvct.SobolSamplingpcvct.SobolVariationpcvct.Sobolʼpcvct.Trialpcvct.VariationIDpcvct.VoxelWeightspcvct.XMLPathBase.runBase.runBase.runDistributions.cdfPairCorrelationFunction.pcfpcvct.NormalDistributedVariationpcvct.UniformDistributedVariationpcvct._connectedComponentspcvct._createTrialpcvct._loadCells!pcvct._loadGraph!pcvct._loadMesh!pcvct._loadSubstrates!pcvct._motilityStatisticspcvct.abstractSamplingForeignReferenceSubSchemapcvct.adaptConfigpcvct.adaptCustomCPPpcvct.adaptCustomCodepcvct.adaptCustomHeaderpcvct.adaptCustomModulespcvct.adaptMainpcvct.adaptMakefilepcvct.adaptProjectpcvct.addAttackRateVariationDimension!pcvct.addColumnspcvct.addCustomDataVariationDimension!pcvct.addDomainVariationDimension!pcvct.addFolderNameColumns!pcvct.addLocationCDFVariationspcvct.addLocationGridVariationspcvct.addMacropcvct.addMacrosIfNeededpcvct.addPhysiECMIfNeededpcvct.addRoadRunnerIfNeededpcvct.addSimulationIDpcvct.addVariationRowpcvct.addVariationspcvct.apoptosisPathpcvct.appendVariationspcvct.assembleIntracellular!pcvct.attackPathpcvct.attackRatePathpcvct.attackRatesPathpcvct.averageExtracellularSubstratepcvct.averageSubstratepcvct.baseToExecutablepcvct.calculateGSA!pcvct.cdfsToVariationspcvct.cellDataSequencepcvct.cellDefinitionPathpcvct.cellInteractionsPathpcvct.cellLabelspcvct.cellParameterNamepcvct.cellPositionsForPCFpcvct.cellTypeToNameDictpcvct.centralDBpcvct.cleanUpStudioInputspcvct.collectSimulationTaskspcvct.columnNamepcvct.columnNameToXMLPathpcvct.commitHashToTagDictpcvct.compilerFlagspcvct.compressIDspcvct.computeVoxelIndicespcvct.computeVoxelSubscriptspcvct.configPathpcvct.connectedComponentspcvct.constituentsTypepcvct.constituentsTypeFilenamepcvct.constructSelectQuerypcvct.copyFilesToFolderspcvct.createComponentDestFilenamepcvct.createDefaultStatusCodesTablepcvct.createExportFolderpcvct.createICCellXMLTemplatepcvct.createICECMXMLTemplatepcvct.createInputFolder!pcvct.createInputFolders!pcvct.createInputsTOMLTemplatepcvct.createPCVCTTablepcvct.createPCVCTVersionTablepcvct.createProjectpcvct.createSchemapcvct.createSimpleInputFolderspcvct.createSortedRBDMatrixpcvct.createTrialpcvct.createXMLFilepcvct.currentPhysiCellVersionIDpcvct.customDataPathpcvct.cyclePathpcvct.dataDirpcvct.deathPathpcvct.defaultJobOptionspcvct.deleteAllSimulationspcvct.deleteMonadpcvct.deleteSamplingpcvct.deleteSimulationpcvct.deleteSimulationspcvct.deleteSimulationsByStatuspcvct.deleteTrialpcvct.domainPathpcvct.eraseSimulationIDFromConstituentspcvct.evaluateFunctionOnSamplingpcvct.executableExistspcvct.executeStudiopcvct.exportIntracellularpcvct.exportSimulationpcvct.finalPopulationCountpcvct.findComponentIDpcvct.folderIsVariedpcvct.formatTimeRangepcvct.fullSavePathpcvct.fusionPathpcvct.generateLHSCDFspcvct.generateRBDCDFspcvct.generateSobolCDFspcvct.getCellDataSequencepcvct.getChildByAttributepcvct.getChildByChildContentpcvct.getContentpcvct.getMeanCountspcvct.getMonadIDDataFramepcvct.getMonadIDspcvct.getSimulationIDspcvct.gitDirectoryIsCleanpcvct.gitRemotespcvct.graphInfopcvct.gridToDBpcvct.icCellParameterNamepcvct.icCellsPathpcvct.icECMParameterNamepcvct.icECMPathpcvct.icFilenamepcvct.importProjectpcvct.indexToFilenamepcvct.inferDeathModelPathpcvct.initialParameterDistributionPathpcvct.initializeDatabasepcvct.initializeModelManagerpcvct.initializeModelManagerpcvct.inputFolderIDpcvct.inputFolderNamepcvct.inputIDsSubSchemapcvct.inputVariationIDsSubSchemapcvct.inputsDictpcvct.insertFolderpcvct.integrityPathpcvct.intracellularAssemblyManifestsEquivalentpcvct.intracellularFolderpcvct.isCrossPCFpcvct.isPhysiECMInConfigpcvct.isRoadRunnerInConfigpcvct.isRoadRunnerInInputspcvct.isRunningOnHPCpcvct.isStartedpcvct.latestReleaseTagpcvct.loadCells!pcvct.loadCustomCodepcvct.loadGraph!pcvct.loadMesh!pcvct.loadSubstrates!pcvct.locationIDNamepcvct.locationIDNamespcvct.locationPathpcvct.locationPathpcvct.locationPathpcvct.locationVariationIDNamepcvct.locationVariationIDNamespcvct.lowerClassStringpcvct.makeMoviepcvct.makeMoviepcvct.makeXMLPathpcvct.makeXMLPathpcvct.mechanicsPathpcvct.meshInfopcvct.metadataDescriptionpcvct.methodStringpcvct.monadsSchemapcvct.motilityPathpcvct.motilityStatisticspcvct.necessaryInputsPresentpcvct.necrosisPathpcvct.orthogonalLHSpcvct.parseProjectInputsConfigurationFilepcvct.pathToICCellpcvct.pathToICECMpcvct.pathToOutputFileBasepcvct.pathToOutputFileBasepcvct.pathToOutputFolderpcvct.pathToOutputXMLpcvct.pathToOutputXMLpcvct.pcfConstantspcvct.pcfSnapshotCalculationpcvct.pcvctDBVersionpcvct.pcvctLogopcvct.pcvctVersionpcvct.perturbVariationpcvct.phagocytosisPathpcvct.phenotypePathpcvct.physiCellCommitHashpcvct.physicellDirpcvct.physicellEmptyGraphpcvct.physicellInfopcvct.physicellIsGitpcvct.physicellVersionpcvct.physicellVersionsSchemapcvct.plotbycelltypepcvct.populateTableOnFeatureSubsetpcvct.populationCountpcvct.populationTimeSeriespcvct.prepCmdForWrappcvct.prepareBaseFilepcvct.prepareBaseRulesetsCollectionFilepcvct.prepareHPCCommandpcvct.prepareIntracellularImportpcvct.prepareLibRoadRunnerpcvct.preparePCF!pcvct.preparePCFPlotpcvct.prepareRulesetsCollectionImportpcvct.prepareSimulationCommandpcvct.prepareVariedInputFolderpcvct.prepareVariedInputFolderpcvct.printInputFolderspcvct.printSimulationsTablepcvct.printVariationIDpcvct.processDistancepcvct.processExcludeCellTypespcvct.processIncludeCellTypespcvct.processPCFCellTypespcvct.processSimulationTaskpcvct.processTimepcvct.projectLocationspcvct.pruneSimulationOutputpcvct.queryToDataFramepcvct.readConstituentIDspcvct.readMacrosFilepcvct.readPhysiCellGraph!pcvct.recognizedStatusCodespcvct.recordConstituentIDspcvct.recordSensitivitySchemepcvct.reinitializeDatabasepcvct.repoOwnerpcvct.resetDatabasepcvct.resetFolderpcvct.resolveMovieGlobalspcvct.resolvePCVCTVersionpcvct.resolvePhysiCellVersionIDpcvct.resolveProjectSource!pcvct.resolveProjectSources!pcvct.resolveSimulationpcvct.resolveStudioGlobalspcvct.retrieveElementpcvct.retrieveElementErrorpcvct.revertConfigpcvct.revertCustomCPPpcvct.revertCustomHeaderpcvct.revertCustomModulespcvct.revertMainpcvct.revertMakefilepcvct.revertSimulationFolderToCurrentPhysiCellpcvct.rm_hpc_safepcvct.ruleParameterNamepcvct.rulePathpcvct.runAbstractTrialpcvct.runSensitivitySamplingpcvct.runStudiopcvct.samplingSimulationIDspcvct.samplingsSchemapcvct.sanitizePathElementpcvct.secretionPathpcvct.sensitivityResults!pcvct.setECMSetupElementpcvct.setJobOptionspcvct.setMarchFlagpcvct.setNumberOfParallelSimspcvct.setUpColumnspcvct.setUpComponentspcvct.setUpICFolderpcvct.setUpInputspcvct.setUpPhysiCellpcvct.setUpRequiredFolderspcvct.setUpScriptspcvct.setUpStudioInputspcvct.setUpTemplatepcvct.shellCommandExistspcvct.shortConfigVariationNamepcvct.shortICCellVariationNamepcvct.shortICECMVariationNamepcvct.shortIntracellularVariationNamepcvct.shortLocationVariationIDpcvct.shortLocationVariationIDpcvct.shortRulesetsVariationNamepcvct.shortVariationNamepcvct.simulationFailedToRunpcvct.simulationIDspcvct.simulationIDspcvct.simulationIDspcvct.simulationsTablepcvct.simulationsTableFromQuerypcvct.sqliteDataTypepcvct.statusCodeIDpcvct.substrateNamespcvct.substratePathpcvct.svgSavePathpcvct.tableNamepcvct.timePathpcvct.transformationPathpcvct.trialFolderpcvct.trialFolderpcvct.trialIDpcvct.trialIDpcvct.trialIDpcvct.trialMonadspcvct.trialSimulationIDspcvct.trialTypepcvct.trialTypepcvct.updateFieldpcvct.updateIntracellularComponentIDs!pcvct.upgradePCVCTpcvct.upgradeToVX_Y_Zpcvct.useHPCpcvct.userParameterPathpcvct.userParametersPathpcvct.variationDataTypepcvct.variationIDspcvct.variationLocationpcvct.variationTargetpcvct.variationValuepcvct.variationValuespcvct.variationsDatabasepcvct.variationsTablepcvct.variationsTablepcvct.variationsTablepcvct.variationsTablepcvct.variationsTablepcvct.variationsTableNamepcvct.variationsToMonadspcvct.vctDBQuerypcvct.volumePathpcvct.writeDescriptionToMetadatapcvct.writePhysiCellCommitHash